miRBase entry: str-mir-7880b-4

Stem-loop str-mir-7880b-4

Accession

MI0027088

Description

Strongyloides ratti str-mir-7880b-4 precursor miRNA

Sequence

UGGUUGGAUCGAUCAGCAAAUAcacauuagauaaugucUUUGCGACCGAAUCCAGGCCACG
(((((((((((.((.(((((...(((((....))))).))))))).)).))))).))))..

Structure

--    -     -  A  A     UAc     a 
  UGGU UGGAU CG UC GCAAA   acauu g
  |||| ||||| || || |||||   |||||  
  ACCG ACCUA GC AG CGUUU   uguaa a
GC    G     A  C  -     --c     u

Annotation confidence Not enough data

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Genome context

Sratti_scf00001_ChrX: 2081543-2081603 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880b-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-7880b-3p

Accession	MIMAT0033305
Description	Strongyloides ratti str-miR-7880b-3p mature miRNA
Sequence	39 - UUUGCGACCGAAUCCAGGCCACG - 61
Evidence	experimental Illumina [1]

Mature str-miR-7880b-4-5p

Accession	MIMAT0033310
Description	Strongyloides ratti str-miR-7880b-4-5p mature miRNA
Sequence	1 - UGGUUGGAUCGAUCAGCAAAUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260