miRBase entry: str-mir-7880d

Stem-loop str-mir-7880d


Accession
MI0027091
Description
Strongyloides ratti str-mir-7880d precursor miRNA


Sequence

GAUUGGGUCAGGCAGCAAAUAuacuuuuuuaagaauguuuaUUUGCGACUGUAUCCACAUCACU
(((((((((((...(((((((.((.(((....))).)).)))))))..))).))))).)))...

Structure
---   -     -   GCA       u  u   u 
   GAU UGGGU CAG   GCAAAUA ac uuu u
   ||| ||||| |||   ||||||| || |||  
   CUA ACCUA GUC   CGUUUau ug aag a
UCA   C     U   -AG       u  u   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Sratti_scf00001_Chr01: 398001-398064 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from str-mir-7880d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880d-5p

Accession MIMAT0033315
Description Strongyloides ratti str-miR-7880d-5p mature miRNA
Sequence 1 - GAUUGGGUCAGGCAGCAAAUA - 21
Evidence experimental
Illumina [1]

Mature str-miR-7880d-3p

Accession MIMAT0033316
Description Strongyloides ratti str-miR-7880d-3p mature miRNA
Sequence 42 - UUUGCGACUGUAUCCACAUCACU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260