Stem-loop str-mir-7880g

Accession

MI0027095

Description

Strongyloides ratti str-mir-7880g precursor miRNA

Gene family

MIPF0002015; mir-7880

Sequence

GGUCAGAUGAGGUCUGCAAAUUaauauucagaaacuuaaUUUGCGACUAAAUUUGGACCAA
((((((((..((((.(((((((((...........)))))))))))))..)))).))))..

Structure

--    -    GA    U         uauu 
  GGUC AGAU  GGUC GCAAAUUaa    c
  |||| ||||  |||| |||||||||    a
  CCAG UUUA  UCAG CGUUUaauu    g
AA    G    AA    -         caaa 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 394490-394550 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880g

Mature str-miR-7880g-5p

• Accession: MIMAT0033323
• Description: Strongyloides ratti str-miR-7880g-5p mature miRNA
• Sequence: 1 - GGUCAGAUGAGGUCUGCAAAUU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880g-3p

• Accession: MIMAT0033324
• Description: Strongyloides ratti str-miR-7880g-3p mature miRNA
• Sequence: 40 - UUUGCGACUAAAUUUGGACCAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260