miRBase entry: str-mir-252a

Stem-loop str-mir-252a


Accession
MI0027096
Description
Strongyloides ratti str-mir-252a precursor miRNA


Sequence

UUAAGUAGUUGUGCCGUAGGUCGucguuaauagugaaucgACCUACACACGGCUCCUUAAGA
(((((.(((((((..((((((((...............)))))))).))))))).)))))..

Structure
--     U       CC        ucguua 
  UUAAG AGUUGUG  GUAGGUCG      a
  ||||| |||||||  ||||||||      u
  AAUUC UCGGCAC  CAUCCAgc      a
AG     C       -A        uaagug 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_Chr02: 3011005-3011066 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from str-mir-252a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-252a-5p

Accession MIMAT0033325
Description Strongyloides ratti str-miR-252a-5p mature miRNA
Sequence 1 - UUAAGUAGUUGUGCCGUAGGUCG - 23
Evidence experimental
Illumina [1]

Mature str-miR-252a-3p

Accession MIMAT0033326
Description Strongyloides ratti str-miR-252a-3p mature miRNA
Sequence 41 - ACCUACACACGGCUCCUUAAGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260