miRBase entry: str-mir-81a

Stem-loop str-mir-81a

Accession

MI0027099

Description

Strongyloides ratti str-mir-81a precursor miRNA

Sequence

AUGGGUCUAUAUGAUUCUCAUGuuaauugauaauaucaUGAGAUCAUGUUAGACUCAUAU
(((((((((((((((.((((((.((........)).)))))))))))).)))))))))..

Structure

--         -      U      u  auu 
  AUGGGUCUA UAUGAU CUCAUG ua   g
  ||||||||| |||||| |||||| ||    
  UACUCAGAU GUACUA GAGUac au   a
UA         U      -      u  aau

Annotation confidence Not enough data

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Genome context

Sratti_scf00001_ChrX: 2147942-2148001 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-81a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-81a-5p

Accession	MIMAT0033331
Description	Strongyloides ratti str-miR-81a-5p mature miRNA
Sequence	1 - AUGGGUCUAUAUGAUUCUCAUG - 22
Evidence	experimental Illumina [1]

Mature str-miR-81a-3p

Accession	MIMAT0033332
Description	Strongyloides ratti str-miR-81a-3p mature miRNA
Sequence	39 - UGAGAUCAUGUUAGACUCAUAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260