miRBase entry: str-mir-5359

Stem-loop str-mir-5359


Accession
MI0027110
Description
Strongyloides ratti str-mir-5359 precursor miRNA


Sequence

UCUGGGAUUGUUUAUCUUGGUAuccaugagaugauaCAAGAAUAAACAUUCCUUGAC
((.((((.(((((((((((.((((........)))))))).))))))).)))).)).

Structure
-  U    U       -    G    cau 
 UC GGGA UGUUUAU CUUG UAuc   g
 || |||| ||||||| |||| ||||    
 AG UCCU ACAAAUA GAAC auag   a
C  U    U       A    -    uag 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_ChrX: 1910078-1910134 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from str-mir-5359
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-5359-5p

Accession MIMAT0033352
Description Strongyloides ratti str-miR-5359-5p mature miRNA
Sequence 1 - UCUGGGAUUGUUUAUCUUGGUA - 22
Evidence experimental
Illumina [1]

Mature str-miR-5359-3p

Accession MIMAT0033353
Description Strongyloides ratti str-miR-5359-3p mature miRNA
Sequence 37 - CAAGAAUAAACAUUCCUUGAC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260