Stem-loop str-mir-252b

Accession

MI0027119

Description

Strongyloides ratti str-mir-252b precursor miRNA

Gene family

MIPF0000285; mir-252

Sequence

UUAAGUAGUAGUGCCGCAGGUUGgaaaauaugauaucacaACCUUCACACCACUGCUUAAU
(((((((((.(((..(.((((((((..........)).)))))).).))).))))))))).

Structure

-         A   CC C      -  aaau 
 UUAAGUAGU GUG  G AGGUUG ga    a
 ||||||||| |||  | |||||| ||     
 AAUUCGUCA CAC  C UCCAac cu    u
U         C   -A U      a  auag 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr02: 3011133-3011193 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-252b

Mature str-miR-252b-5p

• Accession: MIMAT0033370
• Description: Strongyloides ratti str-miR-252b-5p mature miRNA
• Sequence: 1 - UUAAGUAGUAGUGCCGCAGGUUG - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-252b-3p

• Accession: MIMAT0033371
• Description: Strongyloides ratti str-miR-252b-3p mature miRNA
• Sequence: 41 - ACCUUCACACCACUGCUUAAU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260