miRBase entry: str-mir-87a

Stem-loop str-mir-87a


Accession
MI0027135
Description
Strongyloides ratti str-mir-87a precursor miRNA


Sequence

CAUCGGAGACUUUUGGACUCAACCUcagauuguaauaugaagGUGAGCAAGAGCUUCCGGUGUG
((((((((.((((((..((((.(((((..........)).))))))))))))).))))))))..

Structure
--        A      GA    A   -  gauu 
  CAUCGGAG CUUUUG  CUCA CCU ca    g
  |||||||| ||||||  |||| ||| ||     
  GUGGCCUU GAGAAC  GAGU Gga gu    u
GU        C      --    -   a  auaa 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_Chr01: 3619840-3619903 [+]

Database links

Mature str-miR-87a-5p

Accession MIMAT0033402
Description Strongyloides ratti str-miR-87a-5p mature miRNA
Sequence 1 - CAUCGGAGACUUUUGGACUCAACCU - 25
Evidence experimental
Illumina [1]

Mature str-miR-87a-3p

Accession MIMAT0033403
Description Strongyloides ratti str-miR-87a-3p mature miRNA
Sequence 43 - GUGAGCAAGAGCUUCCGGUGUG - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260