miRBase entry: str-mir-2

Stem-loop str-mir-2

Accession

MI0027171

Description

Strongyloides ratti str-mir-2 precursor miRNA

Sequence

UUCAAAAGACUGUGUUUCAGGAuauguaaauuaugUAUCACAGUUAUUUUGAAUCUG
((((((((((((((...((.(((......))).))...))))))).)))))))....

Structure

----       -       UUU  G   au 
    UUCAAAA GACUGUG   CA GAu  g
    ||||||| |||||||   || |||   
    AAGUUUU UUGACAC   gu uua  u
GUCU       A       UAU  a   aa

Annotation confidence Not enough data

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Genome context

Sratti_scf00002_Chr01: 94599-94655 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from str-mir-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-2-5p

Accession	MIMAT0033474
Description	Strongyloides ratti str-miR-2-5p mature miRNA
Sequence	1 - UUCAAAAGACUGUGUUUCAGGA - 22
Evidence	experimental Illumina [1]

Mature str-miR-2-3p

Accession	MIMAT0033475
Description	Strongyloides ratti str-miR-2-3p mature miRNA
Sequence	36 - UAUCACAGUUAUUUUGAAUCUG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260