miRBase entry: str-mir-34b

Stem-loop str-mir-34b

Accession

MI0027177

Description

Strongyloides ratti str-mir-34b precursor miRNA

Sequence

UGGCAGUGUAGUUAGCUGGUUGauguuuuaaaaaucaACAGCUUACCAAAUUGCCAUC
(((((((...((.(((((.(((((.........)))))))))).))...)))))))..

Structure

--       GUA  U     G     guu 
  UGGCAGU   GU AGCUG UUGau   u
  |||||||   || ||||| |||||   u
  ACCGUUA   CA UCGAC Aacua   a
CU       AAC  U     -     aaa

Annotation confidence Not enough data

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Genome context

Sratti_scf00001_Chr00: 1349806-1349863 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from str-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-34b-5p

Accession	MIMAT0033486
Description	Strongyloides ratti str-miR-34b-5p mature miRNA
Sequence	1 - UGGCAGUGUAGUUAGCUGGUUG - 22
Evidence	experimental Illumina [1]

Mature str-miR-34b-3p

Accession	MIMAT0033487
Description	Strongyloides ratti str-miR-34b-3p mature miRNA
Sequence	38 - ACAGCUUACCAAAUUGCCAUC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260