miRBase entry: sma-mir-219

Stem-loop sma-mir-219


Accession
MI0027193
Description
Schistosoma mansoni sma-mir-219 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

aacaaucgauucagUGAUUGUCCAUUCGCAUUUCUUguuagauaauaugaauuauauauuaucaguacuaugauaauauuuaauuuacaAGAGGUGUUGAUGGACAUCauaugaucgauuauu
...((((((((..(((((.(((((((.(((((((((((..........((((((.(((((((((......))))))))).))))))))))))))))).))))))))))))..))))))))...

Structure
aac        ca     U       C           uagauaauau      u         gu 
   aaucgauu  gUGAU GUCCAUU GCAUUUCUUgu          gaauua auauuauca  a
   ||||||||  ||||| ||||||| |||||||||||          |||||| |||||||||   
   uuagcuag  uaCUA CAGGUAG UGUGGAGAaca          uuuaau uauaauagu  c
uua        ua     -       U           ----------      u         au 


Annotation confidence Not enough data
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Genome context
Chr_1: 5023926-5024048 [-]

Database links

Mature sma-miR-219-5p

Accession MIMAT0033504
Description Schistosoma mansoni sma-miR-219-5p mature miRNA
Sequence 15 - UGAUUGUCCAUUCGCAUUUCUU - 36
Evidence experimental
Illumina [1], SOLiD [1]

Mature sma-miR-219-3p

Accession MIMAT0033505
Description Schistosoma mansoni sma-miR-219-3p mature miRNA
Sequence 90 - AGAGGUGUUGAUGGACAUC - 108
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402