miRBase entry: sma-mir-8478

Stem-loop sma-mir-8478


Accession
MI0027280
Description
Schistosoma mansoni sma-mir-8478 precursor miRNA


Sequence

uuucauugaugauauguacaaAAAGGGUUAUAUUAUUCCAuuuuauuaauccauaggauugaccggcuauuugguuuguguuaauagaauAAGGAUAACUUACGCCUGUUaccccucgucgaggagc
.(((.(((((((...(((.....(((..((..((((((.(((((((((((.((.......(((((......))))))).)))))))))))..))))))..))..)))..)))...))))))).))).

Structure
u   a       uau   caaAA   GU  UA      -C           c  uaggauu     gc 
 uuc uugauga   gua     AGG  UA  UUAUUC  Auuuuauuaau ca       gaccg  u
 ||| |||||||   |||     |||  ||  ||||||  ||||||||||| ||       |||||   
 gag agcugcu   caU     UCC  AU  AAUAGG  uaagauaauug gu       uuggu  a
c   g       ccc   ---UG   GC  UC      AA           u  -------     uu 


Annotation confidence Not enough data
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Genome context
SC_0150: 629079-629205 [-]

Database links

Mature sma-miR-8478-5p

Accession MIMAT0033677
Description Schistosoma mansoni sma-miR-8478-5p mature miRNA
Sequence 22 - AAAGGGUUAUAUUAUUCCA - 40
Evidence experimental
SOLiD [1]

Mature sma-miR-8478-3p

Accession MIMAT0033678
Description Schistosoma mansoni sma-miR-8478-3p mature miRNA
Sequence 91 - AAGGAUAACUUACGCCUGUU - 110
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402