Stem-loop atr-MIR396e

Accession

MI0027539

Description

Amborella trichopoda atr-MIR396e precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention atr-MIR396e
(1 sentences)

Sequence

15824 reads, 6096 reads per million, 4 experiments

uuUUCCACAGCUUUCUUGAACUUguuacucaacaaugcaucuccgagaaccaacucgaggagggccugucugaauaccauguucaagaaagccuguggaaag
.((((((((((((((((((((.((.((.((((((..((.(((((..((......))..))))))).))).))).)).)).))))))))))).))))))))).

Structure

u         -           U  u  c   -   au  a     ga  ac 
 uUUCCACAG CUUUCUUGAAC Ug ua uca aca  gc ucucc  ga  c
 ||||||||| ||||||||||| || || ||| |||  || |||||  ||   
 aaagguguc gaaagaacuug ac au agu ugu  cg ggagg  cu  a
g         c           u  c  a   c   -c  -     ag  ca 

Annotation confidence Not enough data

Genome context

scaffold02939: 2915-3016 [+]

Mature atr-miR396e

• Accession: MIMAT0033942
• Description: Amborella trichopoda atr-miR396e mature miRNA
• Sequence: 3 - UUCCACAGCUUUCUUGAACUU - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089