miRBase entry: gra-MIR167a

Stem-loop gra-MIR167a


Accession
MI0027578
Description
Gossypium raimondii gra-MIR167a precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
2 open access papers mention gra-MIR167a
(11 sentences)

Sequence

uuugagagguugaagcugccagcaugaucuggugauuaaccuagcuaucacuuuuucuuuuuuccucccuuuuuauguauguuuuuucugccucuuuagugguauauaugcagauugaaagaccaguuuuggauuaaauuucuugaguuaucuucagccugcuugaacuuuauagcuucauagguaugguuucaacaUCAGAUCAUCUUGCAGCUUCAaucacucacu
..((((.((((((((((((.((.(((((((((((...((((((.((((........................................((((........)))).....((((.(((((.((..(.((..(((......)))..)).)..))))))).))))..(((((....)).))))))).)).))))....))))))))))))).)))))))))))).))))..

Structure
uu    a            c  c           -auu    -  g    cacuuuuucuuuuuuccucccuuuuuauguauguuuuuucugccucuuuagugguauauau    a     a  cc g  uu   uu 
  ugag gguugaagcugc ag augaucuggug    aacc ua cuau                                                             gcag uugaa ga  a uu  gga  a
  |||| |||||||||||| || |||||||||||    |||| || ||||                                                             |||| ||||| ||  | ||  |||   
  acuc cuaACUUCGACG UC UACUAGACUac    uugg au gaua                                                             cguc gacuu cu  u ag  cuu  a
uc    a            U  -           aacu    u  g    --------------------------------------------cuucgauauuucaaguu    c     -  au g  uu   ua 


Annotation confidence Not enough data
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Genome context
chr11: 3832157-3832384 [-]

Database links

Mature gra-miR167a

Accession MIMAT0033983
Description Gossypium raimondii gra-miR167a mature miRNA
Sequence 198 - UCAGAUCAUCUUGCAGCUUCA - 218
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629