miRBase entry: gra-MIR172a

Stem-loop gra-MIR172a


Accession
MI0027583
Description
Gossypium raimondii gra-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
2 open access papers mention gra-MIR172a
(9 sentences)

Sequence

guuugcagauGCGGCAUUAUCAAGAUUCACAaacuuaguacaggguuucauuggagagccaaagggugugguuuagugguaccccuccacaaaaucaccuccuuuuacuucaaaguuuuccuuucaaauaugggaaucuugaugaugcugcaucagcaaaca
((((((.(((((((((((((((((((((.((..........((((...(.((((((....((((((.(((((((.((((.......)))).))))))).))))))..)))))).)...))))........)).))))))))))))))))))))).)))))).

Structure
-      a                     A  aacuuaguac    uuu a      agcc      u       a    ua 
 guuugc gauGCGGCAUUAUCAAGAUUC CA          aggg   c uuggag    aaaggg gugguuu gugg  c
 |||||| ||||||||||||||||||||| ||          ||||   | ||||||    |||||| ||||||| ||||  c
 caaacg cuacgucguaguaguucuaag gu          uccu   g aacuuc    uuuccu cacuaaa cacc  c
a      a                     g  --auaaacuu    uuu a      --au      c       a    uc 


Annotation confidence Not enough data
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Genome context
chr3: 38291923-38292084 [-]

Database links

Mature gra-miR172a

Accession MIMAT0033988
Description Gossypium raimondii gra-miR172a mature miRNA
Sequence 11 - GCGGCAUUAUCAAGAUUCACA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629