miRBase entry: gra-MIR8639h

Stem-loop gra-MIR8639h


Accession
MI0027589
Description
Gossypium raimondii gra-MIR8639h precursor miRNA
Gene family
MIPF0001883; MIR8639


Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaauucuuuuaagugacaaauaugaaaguuguuuuugucuaaauuuuuuuauauuuuucaaaugauuaaauauaaaagucaguuucauuacuaaaaucugauuaguauauauuggaagcuuaaaagaguuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((...)))).))))))......(((((((((((.((....))..)))))))))))(((((.....((((((.......))))))...)))))..)))))))))))))))))))))))))))))))))))))))))))))))))

Structure
g                                                 --------gacaaauaugaaaguuguuuuugucuaaauu           -u  a 
 uaauggaagacuuguuuaauucuacuuauguuuaacaauucuuuuaagu                                       uuuuuauauuu  uc a
 |||||||||||||||||||||||||||||||||||||||||||||||||                                       |||||||||||  ||  
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguugagaaaauucg                                       gaaaauauaaa  ag a
-                                                 aagguuauauaugauuagucuaaaaucauuacuuugacu           uu  u 


Annotation confidence Not enough data
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Genome context
chr7: 20243037-20243238 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR8639h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8639h

Accession MIMAT0033994
Description Gossypium raimondii gra-miR8639h mature miRNA
Sequence 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629