miRBase entry: gra-MIR8643b

Stem-loop gra-MIR8643b


Accession
MI0027595
Description
Gossypium raimondii gra-MIR8643b precursor miRNA
Gene family
MIPF0002008; MIR8643


Sequence

auaucuuuuaACAUAUUAAGAAGUCGAAUUGacaguggagaaagaaguaugaagucgaaagccaucauugucuauaaucaaaacccauaaacccguaccaugauucuuucuucauugccaauucgacuuccugauauguuaaaaggaau
....((((((((((((((.((((((((((((.((((((((((((((.((((..((((..........(((........)))............)).)))))).)))))))))))))).)))))))))))).))))))))))))))....

Structure
auau              A            a              g    aa  -  --aaagccauca   ucu 
    cuuuuaACAUAUUA GAAGUCGAAUUG caguggagaaagaa uaug  gu cg            uug   a
    |||||||||||||| |||||||||||| |||||||||||||| ||||  || ||            |||    
    gaaaauuguauagu cuucagcuuaac guuacuucuuucuu guac  ca gc            aac   u
uaag              c            c              a    --  u  ccaaauacccaa   uaa 


Annotation confidence Not enough data
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Genome context
chr5: 63155058-63155206 [+]

Database links

Mature gra-miR8643b

Accession MIMAT0034000
Description Gossypium raimondii gra-miR8643b mature miRNA
Sequence 11 - ACAUAUUAAGAAGUCGAAUUG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629