miRBase entry: gra-MIR8644

Stem-loop gra-MIR8644


Accession
MI0027597
Description
Gossypium raimondii gra-MIR8644 precursor miRNA


Sequence

agugaagcuuUUAAACUCCAGAAGUAGGGCUagaauguugucauguaucuauuuaauuauuauaggcauuaauuaacuuucuuaaauauauccuaguaagacacauggcaacccucuaacuuugcuuguggaguuuaugaacuucuau
...((((.((.(((((((((.((((((((.((((..((((((((((.(((............((((...((.((((.....)))).))...))))...))).))))))))))..)))).)))))))).))))))))).)).))))...

Structure
agu    c  U         G        C    au          a   auuuaauuauua    cau  a    c 
   gaag uu UAAACUCCA AAGUAGGG Uaga  guugucaugu ucu            uagg   ua uuaa u
   |||| || ||||||||| |||||||| ||||  |||||||||| |||            ||||   || |||| u
   cuuc ag auuugaggu uucguuuc aucu  caacgguaca aga            aucc   au aauu u
uau    a  u         g        a    cc          c   ---------aug    uau  a    c 


Annotation confidence Not enough data
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Genome context
chr13: 35193216-35193363 [+]

Database links

Mature gra-miR8644

Accession MIMAT0034002
Description Gossypium raimondii gra-miR8644 mature miRNA
Sequence 11 - UUAAACUCCAGAAGUAGGGCU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629