miRBase entry: gra-MIR8647

Stem-loop gra-MIR8647


Accession
MI0027600
Description
Gossypium raimondii gra-MIR8647 precursor miRNA


Sequence

augagcauguuagaucaaaaaguaaauugauccuuuuguucaaaauuuuaucaauuccuauuuguuaaaaacugauccaugcauguaagcauaagguacacguggcuugauuauuaugucaaccauacccauuuuuaaccgugaaaaugaauuaauuuuuaauagaaaugACCGAUUUGCUCUUUGAUCUAauguauauaa
......(((((((((((((.(((((((((.((.(((((((.(((((((((.(((.......))).)))).........((((......))))..(((....((((.(((((......))))))))))))((((((((....)))))))).....))))).)))))))..)).))))))))).)))))))))))))......

Structure
augagc             a         a  -c       c     uuuaucaauuccuauuuguuaaaaacugauccaugcauguaagcauaa   acac    c     ua 
      auguuagaucaaa aguaaauug uc  uuuuguu aaaau                                                ggu    gugg uugau  u
      ||||||||||||| ||||||||| ||  ||||||| |||||                                                |||    |||| |||||   
      uguaAUCUAGUUU UCGUUUAGC Ag  aagauaa uuuua                                                cca    uacc aacug  u
aauaua             C         C  ua       u     -----------------------auuaaguaaaagugccaauuuuuac   ----    -     ua 


Annotation confidence Not enough data
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Genome context
chr3: 18899142-18899342 [+]

Database links

Mature gra-miR8647

Accession MIMAT0034005
Description Gossypium raimondii gra-miR8647 mature miRNA
Sequence 171 - ACCGAUUUGCUCUUUGAUCUA - 191
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629