miRBase entry: gra-MIR8650

Stem-loop gra-MIR8650


Accession
MI0027603
Description
Gossypium raimondii gra-MIR8650 precursor miRNA


Sequence

ugguaggagguagauugcauguuguccauuuuauuuagaaaauagauaaauuaguucuuuuagguuaaauuaaagaauaaaucagcauuuucuguuaaaaaucauauccauuuuugcuauucaaaaaugguguaacuaauagaacaaccagaguacaagugucauguguacuuuaugcugacauauaaaaaucaauuauuaacagaagaaauggaugaaaauuuacucauuuuuuuAGUGGAAGGACAAAAUGCAAUCUGacccuuaaua
...((((.((((((((((((.((((((.(((((((.(((((((((.((((((.(((((((...........)))))))..(((....(((((((((((.(((.....(((((((((.....)))))))))((((.((..............)))))).((((((.(((((...)))))))))))..........))).)))))))))))....)))...)))))))).))))))).))))))))))))).))))))))).)))))))...

Structure
ugg    a   -         g      a       u       -  a      aguucuuuuagguuaaauuaaagaauaa   agca           a   cauauccauuuuugcuauucaaaaaugguguaacuaauagaacaaccagaguacaa      u     c 
   uagg ggu agauugcau uugucc uuuuauu agaaaau ag uaaauu                            auc    uuuucuguuaa aau                                                        guguca gugua  
   |||| ||| ||||||||| |||||| ||||||| ||||||| || ||||||                            |||    ||||||||||| |||                                                        |||||| ||||| u
   auuc cca UCUAACGUA AACAGG AAGGUGA uuuuuua uc auuuaa                            uag    agaagacaauu uua                                                        uacagu cguau  
aua    -   G         A      -       u       c  -      -------------------------aag   guaa           a   ----------------------------------------------acuaaaaaua      -     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 1206814-1207083 [+]

Database links

Mature gra-miR8650

Accession MIMAT0034008
Description Gossypium raimondii gra-miR8650 mature miRNA
Sequence 237 - AGUGGAAGGACAAAAUGCAAUCUG - 260
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629