Stem-loop gra-MIR8651

Accession

MI0027605

Description

Gossypium raimondii gra-MIR8651 precursor miRNA

Sequence

uuuggcauugcauaccugcuauuaugauccauuaauucuggauaucccgucuucaagcuccccugcauauuugguaucagaacaugugcaaaaaagauuuccuuuaaaucuuaacagauuuaaaaagaaaaucuaggaguugauggcucugauaccaaauaugcaggggagcuugaagacgggauauccagaaUUAAUGGAUCAUAACAGCAGGUAUguuaugccaa
.(((((((.(((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((..((.....((((((.((((((((((....)))))))..))).))))))....))..)))..)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))).)))))))

Structure

u       u           a                                                            -a   gu  aaaaa      c   --       u 
 uuggcau gcauaccugcu uuaugauccauuaauucuggauaucccgucuucaagcuccccugcauauuugguaucaga  cau  gc     agauuu cuu  uaaaucu a
 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||     |||||| |||  |||||||  
 aaccgua ugUAUGGACGA AAUACUAGGUAAUUaagaccuauagggcagaaguucgaggggacguauaaaccauagucu  gua  ug     ucuaaa gaa  auuuaga a
-       u           C                                                            cg   gu  -agga      a   aa       c 

Annotation confidence Not enough data

Genome context

chr2: 36389047-36389273 [-]

Mature gra-miR8651

• Accession: MIMAT0034010
• Description: Gossypium raimondii gra-miR8651 mature miRNA
• Sequence: 194 - UUAAUGGAUCAUAACAGCAGGUAU - 217
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629