miRBase entry: gra-MIR8654a

Stem-loop gra-MIR8654a


Accession
MI0027612
Description
Gossypium raimondii gra-MIR8654a precursor miRNA
Gene family
MIPF0001954; MIR8654


Sequence

aacuuauucuuuuucuccaucaaaguaguauccuuaaccucguuguuugaaacuuauguuagugguagggguaagaaaacuuucagggggaguaacugugacgguggagaaaaaguugaaauuugagucaaggugacaauggguguaguuauuauuuaaucacagcaaccguuaccgacuugagucgcauuucagcuuuucuccauagucacaaucacucuucccccgaaaagucuuauugcccccaacucugccacaaguauuggacaaugagguuAAGGAUACUACUUUGAUGGAGAAAaagaauaagu
.(((((((((((((((((((((((((((((((((((((((((((((((((.((((......(((((((((((((....(((((..((((((((...((((((.((((((((((.((((((((.(((.((((((((((....(.(((.((((.....)))).))).)....))))))...)))).))).)))))))))))))))))).))))))...))...))))))..)))))....)))))))......)))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))

Structure
a                                                 a    auguua      ------       gaaa     ca      ---  aac      g          a        u   g    ---      aaug g   a    u 
 acuuauucuuuuucuccaucaaaguaguauccuuaaccucguuguuuga acuu      guggua      gggguaa    acuuu  ggggga   gu   ugugac guggagaaaa guugaaau uga ucaa   ggugac    g ugu guua u
 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||      ||||||      |||||||    |||||  ||||||   ||   |||||| |||||||||| |||||||| ||| ||||   ||||||    | ||| |||| a
 ugaauaagaaAAAGAGGUAGUUUCAUCAUAGGAAuuggaguaacagguu ugaa      caccgu      ccccguu    ugaaa  cccccu   ca   acacug uaccucuuuu cgacuuua gcu aguu   ccauug    c aca uaau u
-                                                 a    ------      cucaac       auuc     ag      ucu  cua      a          -        c   g    cag      ccaa g   c    u 


Annotation confidence Not enough data
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Genome context
chr13: 13905949-13906259 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR8654a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8654a

Accession MIMAT0034017
Description Gossypium raimondii gra-miR8654a mature miRNA
Sequence 278 - AAGGAUACUACUUUGAUGGAGAAA - 301
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629