miRBase entry: gra-MIR8666

Stem-loop gra-MIR8666


Accession
MI0027632
Description
Gossypium raimondii gra-MIR8666 precursor miRNA


Sequence

gauuuucgagUUGGUGAUCAUAAGUACAUAAcaaucuagucccccuauuaggucuaaggagggucauaaaguggcguucuuuagagccaucacuucguauuuauacagcuuguugaauacgcagcgaccaccgaaacaugacauuaacuuugccacguguacagguggaucaagccuaucuacauuugaccauuugugcuccucgguuauuugaaucaucaaaacaagggaaagaaaaacuucuuuaaaauaggggguuuuagaaacccuaaacuuauaaauuuaacuuuucuacaaguaggcucgauugaggcuuucuucaagguaaaucuuguuaacuuccucgucucagguuuuagcuuuguuauguacuuaugauaacuaacccagaaacua
...((((..((((((.(((((((((((((((((((((((.(((((((((.(((((((((((.(((((...))))).))))))))).)).((.((.((((((((.(((...))))))))))).)).))........((.((.((.......)).)).))((((((((((.(((((..........)))))))))))))))((((..(((..((((....)))))))..))))(((((....)))))...)))))))))..))))).....................((((......))))(((((.((.(((((.......((((......)))).......)))))..)).))))).....)))))))))))))))))).))))))...))))...

Structure
gau    -ga      G                  -------------------------------------------------------------------------------------------------     -u         ---------------------------------------------------------------------------------------------------------------------------------------------------------------a  -         g     a 
   uuuc   gUUGGU AUCAUAAGUACAUAAcaa                                                                                                 ucuag  cccccuauu                                                                                                                                                                gg ucuaaggag gucau  
   ||||   |||||| ||||||||||||||||||                                                                                                 |||||  |||||||||                                                                                                                                                                || ||||||||| ||||| a
   aaag   caauca uaguauucauguauuguu                                                                                                 agauu  gggggauaa                                                                                                                                                                cc agauuucuu cggug  
auc    acc      a                  ucgauuuuggacucugcuccuucaauuguucuaaauggaacuucuuucggaguuagcucggaugaacaucuuuucaauuuaaauauucaaaucccaa     uu         aauuucuucaaaaagaaagggaacaaaacuacuaaguuuauuggcuccucguguuuaccaguuuacaucuauccgaacuagguggacaugugcaccguuucaauuacaguacaaagccaccagcgacgcauaaguuguucgacauauuuaugcuucacua  g         g     a 


Annotation confidence Not enough data
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Genome context
chr6: 911375-911770 [+]

Database links

Mature gra-miR8666

Accession MIMAT0034037
Description Gossypium raimondii gra-miR8666 mature miRNA
Sequence 11 - UUGGUGAUCAUAAGUACAUAA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629