miRBase entry: gra-MIR8671

Stem-loop gra-MIR8671


Accession
MI0027638
Description
Gossypium raimondii gra-MIR8671 precursor miRNA


Sequence

ugcuuucuucAACUGUUCGUGAUAAGAUGUCGGUgguucaaucuuuauaucccauggugcuaauguaucuucuagaggccauauaucugcuggaauaauucuauuuaccuggccuccagaagauacauuagcaccaugggauauaaagauugaaccaccgacaccuuaucaaaaauaguugaagaaagcau
(((((((((((((((((..(((((((.((((((((((((((((((((((((((((((((((((((((((((((.(((((((..((.....(((((...)))))..))..))))))).)))))))))))))))))))))))))))))))))))))))))))))).)))))))..))))))))))))))))).

Structure
-                 CG       A                                              a       ua  ucugc     u 
 ugcuuucuucAACUGUU  UGAUAAG UGUCGGUgguucaaucuuuauaucccauggugcuaauguaucuucu gaggcca  ua     uggaa  
 |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     ||||| a
 acgaaagaaguugauaa  acuauuc acagccaccaaguuagaaauauaggguaccacgauuacauagaaga cuccggu  au     aucuu  
u                 aa       c                                              c       cc  ---uu     a 


Annotation confidence Not enough data
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Genome context
chr11: 54253078-54253268 [+]

Database links

Mature gra-miR8671

Accession MIMAT0034043
Description Gossypium raimondii gra-miR8671 mature miRNA
Sequence 11 - AACUGUUCGUGAUAAGAUGUCGGU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629