miRBase entry: gra-MIR8680

Stem-loop gra-MIR8680


Accession
MI0027646
Description
Gossypium raimondii gra-MIR8680 precursor miRNA


Sequence

ggacccucagACAGUGGAGGUAUUGUGCCUGgggugucuaugcucgcuuuuagcccuguguucuguuuccuuacucgaaggagagcccaacggguucacgaaguuuggguagcgucucgccaccaaggaaaugugagcauuuggccguccguggcuaaaacugagcauagacacucugggcacaauagcuuuacuguuugaggguccg
(((((((((((((((((((.((((((((((((((((((((((((((.(((((((((((.(((((.((((.......)))).))))).))(((((((((((...(((((...(((...)))..)))))....)))))))......))))..).)))))))).)))))))))))))))))))))))))).))))))))))))))))))).

Structure
-                   G                          c        - uguguucuguuuccuuacucgaaggagagccca    ------       -aag     gua   u 
 ggacccucagACAGUGGAG UAUUGUGCCUGgggugucuaugcucg uuuuagcc c                                 acgg      guucacg    uuugg   gcg  
 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |                                 ||||      |||||||    |||||   ||| c
 ccugggaguuugucauuuc auaacacgggucucacagauacgagu aaaaucgg g                                 ugcc      cgagugu    gaacc   cgc  
g                   g                          c        u -------------------------------cc    gguuua       aaag     -ac   u 


Annotation confidence Not enough data
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Genome context
chr4: 62017078-62017285 [+]

Database links

Mature gra-miR8680

Accession MIMAT0034051
Description Gossypium raimondii gra-miR8680 mature miRNA
Sequence 11 - ACAGUGGAGGUAUUGUGCCUG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629