miRBase entry: gra-MIR7484c

Stem-loop gra-MIR7484c


Accession
MI0027650
Description
Gossypium raimondii gra-MIR7484c precursor miRNA
Gene family
MIPF0001667; MIR7484


Sequence

cuccuguacuAGAAGUCGAAUUGCAUUUUGcccccuuuacucaaaaauugagcaaauuaguccuuguauguuagaucaaggaggaaaucggcccuuugguuaaaaauucuauccauuucuacuauuaaaaaauagucccuauacaucagcaugagguauacguggcauaccacguggcacugucugguuauugcguuagccacaccuguuuuuaacaguauaacuggaugaaauuuuuaauagaaaggacaaauuugcucguugauuugauguacagggauuaauuuauccauuucuugaauagaggcaaaauguaauuugauuucuaguacaagggc
.(((((((((((((((((((((((((((((((...((((.((((((((.((..((((((((((((((((((((((((((.(((.((((..(.(((((.((((((((((.((((((.((.((((.((((((((((((.((.((((.(((...))).))))((((((....)))))))).))))).((((((......))))))......))))))).)))).)).)))))).))))))))))..))))).)..)))).))).)))))))))))))))))))))))))).)).)))).)))).))))))))))))))))))))))))))))))).)))).

Structure
c    -                           ccc    c    -    u  gc                          g   g    cg c     -g          c      u  c    a       -------------------------     c  ---------------u    a   g 
 uccu guacuAGAAGUCGAAUUGCAUUUUGcc   uuua ucaa aaau ga  aaauuaguccuuguauguuagaucaa gag aaau  g ccuuu  guuaaaaauu uaucca uu uacu uuaaaaa                         auagu cc                auac uca  
 |||| |||||||||||||||||||||||||||   |||| |||| |||| ||  |||||||||||||||||||||||||| ||| ||||  | |||||  |||||||||| |||||| || |||| |||||||                         ||||| ||                |||| ||| c
 ggga caugaucuuuaguuuaauguaaaacgg   agau aguu uuua cu  uuuaauuagggacauguaguuuaguu cuc uuua  c ggaaa  uaauuuuuaa guaggu aa auga aauuuuu                         uguca gg                uaug agu  
c    a                           ---    a    c    c  -a                          g   g    aa a     ga          a      c  u    c       guccacaccgauugcguuauugguc     c  ugcaccauacggugca    g   a 


Annotation confidence Not enough data
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Genome context
chr4: 60386882-60387219 [-]

Database links

Mature gra-miR7484c

Accession MIMAT0034055
Description Gossypium raimondii gra-miR7484c mature miRNA
Sequence 11 - AGAAGUCGAAUUGCAUUUUG - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629