miRBase entry: gra-MIR8684

Stem-loop gra-MIR8684


Accession
MI0027652
Description
Gossypium raimondii gra-MIR8684 precursor miRNA


Sequence

uaugcuagaccaaagaguaaaucauuuauuucuauuaaaaauuucaucuauuuauacuauuaaaacuuggcaugguugacaaaauauguaccucuuguugacuuauaaaaaucaguuuuuaacaauagaaaugaauauauuuuauaauAGAAUGACUGGUUUACUCUUUgaucuaacau
.(((.((((.((((((((((((((.(((((.((((((((((((((((...(((((......((((((......(((((((((............)))))))))..........)))))).....))))).)))))...))))).))))))))))).)))))))))))))).)))).)))

Structure
u   c    c              u     u      -     ---     cua     acuauu      ----uggcau         aauau 
 aug uaga caaagaguaaauca uuauu cuauua aaaau   uucau   uuuau      aaaacu          gguugacaa     g
 ||| |||| |||||||||||||| ||||| |||||| |||||   |||||   |||||      ||||||          |||||||||      
 uac aucu gUUUCUCAUUUGGU AGUAA GAuaau uuuua   aagua   agaua      uuuuga          ucaguuguu     u
-   a    a              C     -      a     uau     --a     -acaau      cuaaaaauau         cucca 


Annotation confidence Not enough data
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Genome context
chr1: 11357060-11357238 [-]

Database links

Mature gra-miR8684

Accession MIMAT0034057
Description Gossypium raimondii gra-miR8684 mature miRNA
Sequence 149 - AGAAUGACUGGUUUACUCUUU - 169
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629