miRBase entry: gra-MIR8685

Stem-loop gra-MIR8685


Accession
MI0027653
Description
Gossypium raimondii gra-MIR8685 precursor miRNA


Sequence

ugacuuucuaucaggaaaaguauuugaagugucauuuguugagcagucaaauggauauucgaauaaagguggugugucuggggugauuauguucgguuuuaucuuuggguugucucucuacucuaaagagagaucaaagggguuaaaaccgaguauaauaccuuugucugagaguucggucgauugcucgauAGACGACACUUCAAAGAUUUCUCCcaagagaguu
.((((((((....(((.((((.(((((((((((.((((((((((((((...(((((.((((.((((((((...............((((((((((((((((((((((....((((((((.......))))))))))))))...)))))))))))))))))))))))).)))).)))))...)))))))))))))).))))))))))).)))).)))..))))))))

Structure
u        auca   a    a           a              aaa     a    a        ggugugucuggggug                ---      gguu        ac 
 gacuuucu    gga aagu uuugaaguguc uuuguugagcaguc   uggau uucg auaaaggu               auuauguucgguuuua   ucuuug    gucucucu  u
 ||||||||    ||| |||| ||||||||||| ||||||||||||||   ||||| |||| ||||||||               ||||||||||||||||   ||||||    ||||||||  c
 uugagaga    CCU UUUA AAACUUCACAG AGAuagcucguuag   gcuug gagu uguuucca               uaauaugagccaaaau   ggaaac    uagagaga  u
-        --ac   C    G           C              cug     a    c        ---------------                ugg      ----        aa 


Annotation confidence Not enough data
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Genome context
chr2: 211480-211705 [-]

Database links

Mature gra-miR8685

Accession MIMAT0034058
Description Gossypium raimondii gra-miR8685 mature miRNA
Sequence 193 - AGACGACACUUCAAAGAUUUCUCC - 216
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629