miRBase entry: gra-MIR8688

Stem-loop gra-MIR8688


Accession
MI0027656
Description
Gossypium raimondii gra-MIR8688 precursor miRNA


Sequence

uuucaucagaAGAGGAUGCUUUAUAAAACUCAUAcacaagcacgaggaagaaaaaugcaguggcauuucaauauaaucaaguaauucauuuuacccaucuccaccaaagacggugaccccguuacuauaaccuucaauagaauuaggguguaacaaguuuuaguaacaagguuauugccuuuaguugagaucgauaaaacgaauuacuugauuauacuggaagaccccugugauuuuuuuccuugaacucguguaugauuuuuauaaagcaugcucaucugacgagga
((((.(((((.(((.(((((((((((((.((((((((.((..((((((((((((.(((((.((..(((((.((((((((((((((((.(((((.(.(((((.((.((((.((((((((..(((((((..(((((.(((...))))))))...........)))))))..)))))))).)))).)).))))).).))))).)))))))))))))))).)))))..)).))))).))))))))))))..)).)))))))).))))))))))))).))).))))).)))).

Structure
-    a     A   G             C        a  ca            a     u  ca     a                a     c c     c  c    a        cc       ---------ua     c   a 
 uuuc ucaga GAG AUGCUUUAUAAAA UCAUAcac ag  cgaggaagaaaa ugcag gg  uuuca uauaaucaaguaauuc uuuua c aucuc ac aaag cggugacc  guuacua           accuu aau  
 |||| ||||| ||| ||||||||||||| |||||||| ||  |||||||||||| ||||| ||  ||||| |||||||||||||||| ||||| | ||||| || |||| ||||||||  |||||||           ||||| ||| g
 ggag agucu cuc uacgaaauauuuu aguaugug uc  guuccuuuuuuu guguc cc  aaggu auauuaguucauuaag aaaau g uagag ug uuuc guuauugg  caaugau           uggga uua  
a    c     a   g             u        c  aa            a     c  ag     c                c     a c     u  a    c        aa       uuugaacaaug     -   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 11683035-11683322 [+]

Database links

Mature gra-miR8688

Accession MIMAT0034061
Description Gossypium raimondii gra-miR8688 mature miRNA
Sequence 11 - AGAGGAUGCUUUAUAAAACUCAUA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629