miRBase entry: gra-MIR7584e

Stem-loop gra-MIR7584e


Accession
MI0027666
Description
Gossypium raimondii gra-MIR7584e precursor miRNA
Gene family
MIPF0001667; MIR7484


Sequence

acucuguauuAGGAGUUAGAUUGUAUUUUAUcccauuuacacaaaaaaauaggcaaauugauuuuucuacguuagauaaaaaaguaaauugaucuuucaauuaaaaauuucauacauuuuugcuauuaaaaauugguuuuuguaccuuaaaaugagacacauugcguguaacuaucuaguuauuuuaucuauuaugccaauuuuuaauagaaaugaucaauuuguuuugagaucuaacgaaaaagauaaauuuauuuauuuuuuauaaacgaaaaaaaauacaauuuaacuuuuaguauaaagg
.((.(((((((((((((((((((((((((......((((....((((((((((.(((((.((((((.(.((((((((...((((((((((((((.......(((((((.......)))))))(((((((((((((((....(((...((((((((.((((.....))))..........))))))))..)))...)))))))))))))))....))))))))))))))...))))))))).)))))).))))).)))))))))).))))......))))))))))))))))))))))))).)).

Structure
a  c                         AUccca    caca          c     g      c a        aaa              uuucaauuaaaaauuucauacauuuuug               uuuu   ccu        ---------g    a 
 cu uguauuAGGAGUUAGAUUGUAUUUU      uuua    aaaaaauagg aaauu auuuuu u cguuagau   aaaguaaauugauc                            cuauuaaaaauuggu    gua   uaaaauga          acac u
 || |||||||||||||||||||||||||      ||||    |||||||||| ||||| |||||| | ||||||||   ||||||||||||||                            |||||||||||||||    |||   ||||||||          |||| u
 ga auaugauuuucaauuuaacauaaaa      aaau    uuuuuuauuu uuuaa uagaaa a gcaaucua   uuuuguuuaacuag                            gauaauuuuuaaccg    uau   auuuuauu          ugug g
g  a                         aaaagc    ---a          a     a      a -        gag              ------------------------uaaa               -uau   -cu        gaucuaucaa    c 


Annotation confidence Not enough data
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Genome context
chr9: 746856-747159 [-]

Database links

Mature gra-miR7584e

Accession MIMAT0034071
Description Gossypium raimondii gra-miR7584e mature miRNA
Sequence 11 - AGGAGUUAGAUUGUAUUUUAU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629