miRBase entry: gra-MIR8710a

Stem-loop gra-MIR8710a


Accession
MI0027692
Description
Gossypium raimondii gra-MIR8710a precursor miRNA
Gene family
MIPF0001866; MIR8710


Sequence

uaucaaauuuAUACAUGAACUUUGGUCCAAugugcaauuucauaaaugagcuuuaauuauacaccuagaccucaaauugugguucaaauauauuaauggaaguuugauuuugauucaauuacacacauuuaaaaaaugaauacauacauuuauuuucauauguacggcauuacacauuagaucaaaauucauguaugcuuugauau
(((((((..((((((((((.(((((((.((((((.....(((.(((((((((((.((((........((((.((...)).)))).........)))).))))))).)))))))...........((((....(((((((((......)))))))))...)))).........)))))).))))))).)))))))))).))))))).

Structure
-       uu          C       C      ------------------------------------------------------caauu   u    -       a    -uacaccua    u  a 
 uaucaaa  uAUACAUGAA UUUGGUC AAugug                                                           uca aaau gagcuuu auua         gacc ca  
 |||||||  |||||||||| ||||||| ||||||                                                           ||| |||| ||||||| ||||         |||| || a
 auaguuu  guauguacuu aaacuag uuacac                                                           agu uuua uuugaag uaau         uugg gu  
u       -c          a       a      auuacggcauguauacuuuuauuuacauacauaaguaaaaaauuuacacacauuaacuu   -    g       g    uauauaaac    u  u 


Annotation confidence Not enough data
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Genome context
chr11: 1450830-1451035 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gra-MIR8710a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8710a

Accession MIMAT0034097
Description Gossypium raimondii gra-miR8710a mature miRNA
Sequence 11 - AUACAUGAACUUUGGUCCAA - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629