miRBase entry: gra-MIR8712

Stem-loop gra-MIR8712


Accession
MI0027695
Description
Gossypium raimondii gra-MIR8712 precursor miRNA


Sequence

caauuaauuauaagaugacacaucaucacucguguaaaacaaaaaauauugaaggguuuaaaaauaaauauaaacaaauuuauuugaaaaaauaaauauuaauuauauuuauuaaacauaaauaaauauaaaaacaucaaauucaagacccaaaccucaaaaccugaaauacaaaaauuaaaagucaaaacuagaaaccuaaaacucgagauccaaaaccuaaaggagaaacaaaauaauuauaauuauuaauauuuaauaauguuuaaauaaaguuaauuuuauuuauuuuucaagugauuugauauuuuuuauuuuAUAUCAUUGGUGAUGUAUCGUCUUauuaauaauu
.(((((...(((((((((.(((((((((...((((((((.(((((((((((((..(((((..........)))))....((((((((((((.((((((..(((((..((((((((((((...(((((((...........................(((.....)))........................(((....)))..........(((..........))).......((((((....)))))).)))))))...)))))).))))))..))))).))))))))))))))))))))))))))))))).))))))))...))))))))).)))))))))...)))))

Structure
c     auu         c         cuc        c             ggguuuaaaaauaaauauaaacaaau            a      uu     ua      -      aaa       aaaaacaucaaauucaagacccaaaccucaaaaccugaaauacaaaaauuaaaagucaaaacuagaaaccuaaaacucgagauccaaaaccuaaaggagaaacaa      u 
 aauua   auaagauga acaucauca   guguaaaa aaaaaauauugaa                          uuauuugaaaaa uaaaua  aauua  uuuauu aaacau   uaaauau                                                                                                         aauaau a
 |||||   ||||||||| |||||||||   |||||||| |||||||||||||                          |||||||||||| ||||||  |||||  |||||| ||||||   |||||||                                                                                                         ||||||  
 uuaau   uaUUCUGCU UGUAGUGGU   UAUAuuuu uuuuuuauaguuu                          agugaacuuuuu auuuau  uuaau  aaauaa uuugua   auuuaua                                                                                                         uuauua u
-     aau         A         UAC        a             --------------------------            -      -u     ug      a      aua       --------------------------------------------------------------------------------------------------------a      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 66376865-66377216 [-]

Database links

Mature gra-miR8712

Accession MIMAT0034100
Description Gossypium raimondii gra-miR8712 mature miRNA
Sequence 319 - AUAUCAUUGGUGAUGUAUCGUCUU - 342
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629