miRBase entry: gra-MIR7504i

Stem-loop gra-MIR7504i


Accession
MI0027696
Description
Gossypium raimondii gra-MIR7504i precursor miRNA
Gene family
MIPF0001798; MIR7504


Sequence

agaaaggauuAUAUGAAACUGAGAUACCAUGucauuuguauccauuuucaauaauuuaaugucauuuuagcauuuucaucuuaaauuucagcacauuauguuggauuugguuauuuuuaagaugaaaaaugcuaaaaugauuuuaaauuauugaaaagagauacaaugacaugguaucccaguuucuuacaaucuuuucuc
((((((((((.((.(((((((.((((((((((((((.(((((..(((((((((((((((.(((((((((((((((((((((((((.(((((((.....)))))))..........))))))))).)))))))))))))))).)))))))))))))))..))))))))))))))))))).))))))).)).)))))))))).

Structure
-          A  U       A              u     ca               u                -         ---------u       c 
 agaaaggauu UA GAAACUG GAUACCAUGucauu guauc  uuuucaauaauuuaa gucauuuuagcauuuu caucuuaaa          uucagca a
 |||||||||| || ||||||| |||||||||||||| |||||  ||||||||||||||| |||||||||||||||| |||||||||          ||||||| u
 ucuuuucuaa au cuuugac cuaugguacaguaa cauag  aaaaguuauuaaauu uaguaaaaucguaaaa guagaauuu          agguugu u
c          c  u       c              -     ag               u                a         uuauugguuu       a 


Annotation confidence Not enough data
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Genome context
chr10: 37907762-37907962 [-]

Database links

Mature gra-miR7504i

Accession MIMAT0034101
Description Gossypium raimondii gra-miR7504i mature miRNA
Sequence 11 - AUAUGAAACUGAGAUACCAUG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629