miRBase entry: gra-MIR8714

Stem-loop gra-MIR8714


Accession
MI0027698
Description
Gossypium raimondii gra-MIR8714 precursor miRNA


Sequence

cacuuuguccucucuacuuucauucaauccaucacguuagccccuugaccauuuccguuaaaaaaauuccaccuguucauguguuugccccuugacuuguaaugaaauuuuuaguuuggccucuguaugauagugaaguuuucacuuuggccccucauguguucagauuugauuggcuuaaauggccacacgggaucuuuuuuaacagaaauggccaauaggcuaaagugAUGGACGAAAUGAAAGUAGAGagggcaaagu
.(((((((((((((((((((((((...((((((((.((((((..(((.(((((((.((((((((((((((..(((..((((((...(((((..((((...............)))).))............((((((...))))))..)))....))))))..))).......(((((.....)))))...))))).))))))))).))))))).)))..)))))).))))))))...)))))))))))))))))))))))

Structure
c                       caa        g      cc   a       c         -     -----------------------ac   uu      -uuu   -----------------------------  uu    uguaau 
 acuuuguccucucuacuuucauu   uccaucac uuagcc  uug ccauuuc guuaaaaaa auucc                         cug  caugug    gcc                             cc  gacu      g
 |||||||||||||||||||||||   |||||||| ||||||  ||| ||||||| ||||||||| |||||                         |||  ||||||    |||                             ||  ||||      a
 ugaaacgggaGAGAUGAAAGUAA   AGGUAgug aaucgg  aac gguaaag caauuuuuu uaggg                         gac  guguac    cgg                             gg  uuga      a
-                       AGC        a      au   c       a         c     cacaccgguaaauucgguuaguuua   uu      uccc   uuucacuuuugaagugauaguaugucucc  -u    uuuuua 


Annotation confidence Not enough data
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Genome context
chr9: 66775782-66776042 [-]

Database links

Mature gra-miR8714

Accession MIMAT0034103
Description Gossypium raimondii gra-miR8714 mature miRNA
Sequence 231 - AUGGACGAAAUGAAAGUAGAG - 251
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629