miRBase entry: gra-MIR8721a

Stem-loop gra-MIR8721a


Accession
MI0027706
Description
Gossypium raimondii gra-MIR8721a precursor miRNA
Gene family
MIPF0001860; MIR8721


Sequence

acguuuuaauuauauccucaaauuauugauuuauaucaagccaaauccuuucguuauuaaaauuguuaaaugacacauuaaaucuuauauagcuaaauuuaaauaaaaauagaauguugucgcauaacuuuuaaaaguaaaaaauaaaaauaaaguaaaacugaauaaaaagagugaacaauaaagccuccguaaaagcuuugaaaaccucaaagcuacauuuuuaaaaacaucaauuuuuacauauucauuuuuucuuaaaguuuuucauuuuaaauuauauaacauaaaguuaagauauagugugucauuuaauaguuaaauuaacaauuuuaauaauggaaggaccuaauuaauauaaCAUCGAUAGUUUGAGGAUGUAauuaaaauga
.(((((((((((((((((((((((((((((((((((.((......(((((((((((((((((((((((((((((((((((.((((((....(((...............(((((.(((((...)))))))))).................((((((((((((......((((((((((..................((((((((.....)))))))).......((((((......))))))....)))))))))).....))))))..))))))...............))))))))).)))))))))))............)))))))))))))))))))))))).....)).)))))).))))))))))))))))))))))))))))).

Structure
a                             -      c  gccaaa                        ------------           a      uaua   aaauuuaaauaaaaauagaauguugucgcauaacuuuuaaaaguaaaaaauaaaaa      --      gaauaa          caauaaagccuccguaaaagcuuugaaaaccuc 
 cguuuuaauuauauccucaaauuauugau uuauau aa      uccuuucguuauuaaaauuguuaa            augacacauua aucuua    gcu                                                        uaaagu  aaaacu      aaagagugaa                                 a
 ||||||||||||||||||||||||||||| |||||| ||      ||||||||||||||||||||||||            ||||||||||| ||||||    |||                                                        ||||||  ||||||      ||||||||||                                  
 guaaaauuaAUGUAGGAGUUUGAUAGCUA aauaua uu      aggaagguaauaauuuuaacaauu            uacugugugau uagaau    uga                                                        auuuua  uuuuga      uuuuuuacuu                                 a
a                             C      a  -aaucc                        aaauugauaauu           a      ----   -----------------------------------------aauacaauauauuaa      cu      -aauuc          auacauuuuuaacuacaaaaauuuuuacaucga 


Annotation confidence Not enough data
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Genome context
chr11: 57136165-57136556 [+]

Database links

Mature gra-miR8721a

Accession MIMAT0034111
Description Gossypium raimondii gra-miR8721a mature miRNA
Sequence 362 - CAUCGAUAGUUUGAGGAUGUA - 382
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629