miRBase entry: gra-MIR8725

Stem-loop gra-MIR8725


Accession
MI0027713
Description
Gossypium raimondii gra-MIR8725 precursor miRNA


Sequence

aaucuuuaauaaguugguauuauccuugguuagaguuuuaucucucugauugccuaaggcgauaaguuugcagaauaagggcaccucaucgagauuggaccauacauguugcaccuaccauaguaaaguuugaaccuugucaaaaugucuauauuuccuuugauaggugauugugugccacacaugguccgauauugacaaggugcucuugcucuaugaacccaucgccuuagguauuuggacucuccuuaaaguugggaaacgaaaaCCUGACUAGAGACAAUACCAACCUauugaggauc
.((((((((((.(((((((((.((.((((((((.(((((.....(((((.(((((((((((((..(((((.(((.(((((((((((..((((.((((((((((...(((.(((((((((.((.((((((((((......))))).............))))).))))))...).)))).))).)))))))))).))))..))))))))))).))).)))))..))))))))))))).)))))...((((.......))))....))))))))))))).)).))))))))).)))))))))).

Structure
a          a         a  c        a     -----------------aucuc     u             aa     c   a           ca    g          aca   u    - ---    a  g     -------------     ac 
 aucuuuaaua guugguauu uc uugguuag guuuu                      ucuga ugccuaaggcgau  guuug aga uaagggcaccu  ucga auuggaccau   ugu gcac c   uacc ua uaaag             uuuga  c
 |||||||||| ||||||||| || |||||||| |||||                      ||||| |||||||||||||  ||||| ||| |||||||||||  |||| ||||||||||   ||| |||| |   |||| || |||||             |||||   
 uaggaguuaU CAACCAUAA AG GAUCAGUC Caaaa                      agguu auggauuccgcua  caagu ucu guucucgugga  aguu uagccuggua   aca cgug g   gugg au guuuc             aaacu  u
c          C         C  A        -     gcaaaggguugaaauuccucuc     u             cc     a   c           ac    a          --c   c    u uua    -  a     cuuuauaucugua     gu 


Annotation confidence Not enough data
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Genome context
chr3: 1634804-1635105 [+]

Database links

Mature gra-miR8725

Accession MIMAT0034118
Description Gossypium raimondii gra-miR8725 mature miRNA
Sequence 269 - CCUGACUAGAGACAAUACCAACCU - 292
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629