miRBase entry: gra-MIR8729

Stem-loop gra-MIR8729


Accession
MI0027724
Description
Gossypium raimondii gra-MIR8729 precursor miRNA


Sequence

auuguuccuauuguguuuauacucgauuuagccuuaaguuuuugucucccuauuucgagaaagggcgguagucuucuuauccacuaagacccuuuaaggguagggguucgaacccccuccgugaaccccuuuaggcuuuucucggaguagggagacaaaaacccaaggCUAAAAUCGAGCAUAGACAUCucaggaauaa
.((((((((...((((((((.((((((((((((((..(((((((((((((((((((((((((((.((((((.....))))).......(((((...)))))(((((((((...........)))))))))...).)))))))))))))))))))))))))))..)))))).)))))))).))))))))...))))))))

Structure
a        auu        a        -      aa                           g gguagucuucuuauccacuaagacccuuuaagggu         aacc 
 uuguuccu   guguuuau cucgauuu agccuu  guuuuugucucccuauuucgagaaagg c                                   agggguucg    c
 ||||||||   |||||||| |||||||| ||||||  ||||||||||||||||||||||||||| |                                   |||||||||    c
 aauaagga   UACAGAUA GAGCUAAA UCggaa  caaaaacagagggaugaggcucuuuuc g                                   uccccaagu    c
-        cuC        C        A      cc                           g --------------------------------auu         gccu 


Annotation confidence Not enough data
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Genome context
chr2: 534925-535123 [+]

Database links

Mature gra-miR8729

Accession MIMAT0034129
Description Gossypium raimondii gra-miR8729 mature miRNA
Sequence 169 - CUAAAAUCGAGCAUAGACAUC - 189
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629