miRBase entry: gra-MIR166c

Stem-loop gra-MIR166c


Accession
MI0027751
Description
Gossypium raimondii gra-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention gra-MIR166c
(5 sentences)

Sequence

gaugggaauguuguuuggcucgaggucauauagguugaucuuuuauauauaauuuccaugaaauuuucuuggauuuauuuaaauuuuccgggaaaguuucuggauauguguauauauauagccuUAUAUGAUCUCGGACCAGGCUucauucccgu
.(((((((((..((((((.((((((((((((((((((......((((((((...((((.((((((((((((((.............))))))))))))))))))))))))))......))))).))))))))))))).))))))..)))))))))

Structure
g         uu      c             -     aucuuu        auu    u              uuuau 
 augggaaug  guuugg ucgaggucauaua gguug      uauauaua   ucca gaaauuuucuugga     u
 |||||||||  |||||| ||||||||||||| |||||      ||||||||   |||| ||||||||||||||     u
 ugcccuuac  CGGACC GGCUCUAGUAUAU ccgau      auguguau   aggu cuuugaaagggccu     a
-         uU      A             u     auauau        ---    -              uuuaa 


Annotation confidence Not enough data
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Genome context
chr5: 63621122-63621276 [+]

Database links

Mature gra-miR166c

Accession MIMAT0034156
Description Gossypium raimondii gra-miR166c mature miRNA
Sequence 125 - UAUAUGAUCUCGGACCAGGCU - 145
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629