miRBase entry: gra-MIR8745

Stem-loop gra-MIR8745


Accession
MI0027761
Description
Gossypium raimondii gra-MIR8745 precursor miRNA


Sequence

caggucggguuuuuguuucccggcucugucgagagcccgaauugaugaaaaugggcaccauuuccuugguggcgcauggcccgauccaacuagacgcuccugcuccaugaacccugucuccagcucaggcucUCAACGGAGUUGGGAGACAAAacuccggccu
.((((((((.(((((((((((((((((((.(((((((.((.(((..((....(((..........((.((((.(((.((..((.((......))))..))))).)))).)))))..))..))).)).))))))).))))))))))))))))))).))))))))

Structure
c        u                   c       c  a   au  aaau   caccauuucc  g    c   u  cc  a  ca 
 aggucggg uuuuguuucccggcucugu gagagcc ga uug  ga    ggg          uu gugg gca gg  cg uc  a
 |||||||| ||||||||||||||||||| ||||||| || |||  ||    |||          || |||| ||| ||  || ||   
 uccggccu aAAACAGAGGGUUGAGGCA CUcucgg cu gac  cu    ccc          aa uacc cgu cc  gc ag  c
-        c                   A       a  c   cu  --gu   ----------  g    u   -  uc  -  au 


Annotation confidence Not enough data
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Genome context
chr13: 57000135-57000297 [+]

Database links

Mature gra-miR8745

Accession MIMAT0034166
Description Gossypium raimondii gra-miR8745 mature miRNA
Sequence 133 - UCAACGGAGUUGGGAGACAAA - 153
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629