miRBase entry: gra-MIR8752

Stem-loop gra-MIR8752


Accession
MI0027774
Description
Gossypium raimondii gra-MIR8752 precursor miRNA


Sequence

acgucuuaauUGAUGGAGAUAGGUAUCUGCAggauuugagaaagauaucuauauaggacaugugaauauaauaaaauuacaggagcaccccgagauucuaccuaccaaccaaggcgcuuuuaagcaucgguuggugguuugagucguccggcauucagauaacuccauuauuauucuuacgccuuauauagacaccuucuccgaguuuugcagauacuuaucuacaccagucaagacau
..(((((.((((.((.((((((((((((((((((((((((((.(...((((((((((...(((((..(((((((.......((((...((.(((((((...(((((((((...((........))...)))))))))...))))).)).))...........)))).)))))))..))))).))))))))))...))))).)))))))))))))))))))))).)).)))).)))))..

Structure
ac     a    A  G                      -    a aua          aca     au       aauuaca    --------cac  c  -     uac         aag  gcu 
  gucuu auUG UG AGAUAGGUAUCUGCAggauuug agaa g   ucuauauagg   uguga  auaauaa       ggag           cc ga gauuc   cuaccaacc   gc   u
  ||||| |||| || |||||||||||||||||||||| |||| |   ||||||||||   |||||  |||||||       ||||           || || |||||   |||||||||   ||    
  cagaa ugac ac ucuauucauagacguuuugagc ucuu c   agauauauuc   gcauu  uauuauu       ccuc           gg cu cugag   ggugguugg   cg   u
ua     c    c  a                      c    - cac          --c     cu       ------a    aauagacuuac  c  g     uuu         cua  aau 


Annotation confidence Not enough data
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Genome context
chr7: 465419-465657 [-]

Database links

Mature gra-miR8752

Accession MIMAT0034179
Description Gossypium raimondii gra-miR8752 mature miRNA
Sequence 11 - UGAUGGAGAUAGGUAUCUGCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629