miRBase entry: gra-MIR8775

Stem-loop gra-MIR8775


Accession
MI0027808
Description
Gossypium raimondii gra-MIR8775 precursor miRNA
Gene family
MIPF0001899; MIR8775


Sequence

gagacuucaaUUGUGAGAUUGAAGCUGAUGGgaaagugguaauaaagggauccuaaaaacucgugagaaaauaguaugcaaggacuuugaaauuuuucuucacaauugcuucaagcauuccguuuuccaaauaagugguugguucuugguuauugacgggaccaaguagcuugaaugagaugaagcgugucggugggcauagauuuugugugagcauaagaaaauuuucaaagccccugaauacuauuugcucccccauuguuaguaucccccuuauuaccauuucuucaucaacuuuaaucucacaauugaagucucu
((((((((((((((((((((((((.(((((((.((((((((((((.(((((.((((........(((.(((((((((.((.((.((((((((.(((((((((((...((((((..(((((......(((......)))..(((((((((((........))))))).)))).)))))...))))))(((((....)))))........))))).....)))))).)))))))).)).)).))))))))).)))........)))).)))))..)))))))))))).))))))).)))))))))))))))))))))))).

Structure
-                        C       a            -a     c    aaacucgu   a         g  a  a        u      -----     -------------------auu      -ag     cguuuuccaaauaagugguu    -       auu 
 gagacuucaaUUGUGAGAUUGAAG UGAUGGg aagugguaauaa  gggau cuaa        gag aaauaguau ca gg cuuugaaa uuuucu     ucaca                      gcuuca   cauuc                    gguu cuugguu   g
 |||||||||||||||||||||||| ||||||| ||||||||||||  ||||| ||||        ||| ||||||||| || || |||||||| ||||||     |||||                      ||||||   |||||                    |||| |||||||    
 cucugaaguuaacacucuaauuuc acuacuu uuuaccauuauu  cccua gauu        cuc uuuaucaua gu cc gaaacuuu aaaaga     agugu                      cgaagu   guaag                    ucga gaaccag   a
u                        a       c            cc     u    guuacccc   g         a  c  c        u      auacg     guuuuagauacggguggcugug      aga     -------------------u    u       ggc 


Annotation confidence Not enough data
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Genome context
chr13: 51821710-51822028 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gra-MIR8775
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8775

Accession MIMAT0034213
Description Gossypium raimondii gra-miR8775 mature miRNA
Sequence 11 - UUGUGAGAUUGAAGCUGAUGG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629