miRBase entry: gra-MIR8776b

Stem-loop gra-MIR8776b


Accession
MI0027815
Description
Gossypium raimondii gra-MIR8776b precursor miRNA
Gene family
MIPF0001899; MIR8775


Sequence

ggggggagcaaauaguauguagggacuuugaaaauuuucuuaugcucacacaaaaucuaugcacaccgacacccuucaucucauucaagcuaguuggucacgucaauaaccaagaaccgaccauuuauuuagaaaacaaaaugcuugaagccauuguaaagaaaaaUUUCAAAGUCCUUGCAUACUAUUUugucaccagu
...((((..((((((((((((((((((((((((.(((((((.(((...............))).............((.....((((((((((.(((((...((.........))...))))).)))...............))))))).....))..))))))).))))))))))))))))))))))))..)).))...

Structure
ggg  -  gc                        a       augcucacacaaaaucuaugcacaccgacacccuu  ucuca       ---------------   u     acg  aau 
   gg ga  aaauaguauguagggacuuugaaa uuuucuu                                   ca     uucaagc               uag ugguc   uc   a
   || ||  |||||||||||||||||||||||| |||||||                                   ||     |||||||               ||| |||||   ||   a
   cc cu  UUUAUCAUACGUUCCUGAAACUUU aaaagaa                                   gu     aaguucg               auu accag   ag   c
uga  a  gu                        a       ---------------------------------au  uaccg       uaaaacaaaagauuu   u     cca  aac 


Annotation confidence Not enough data
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Genome context
chr13: 51864610-51864809 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gra-MIR8776b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gra-miR8776b

Accession MIMAT0034220
Description Gossypium raimondii gra-miR8776b mature miRNA
Sequence 167 - UUUCAAAGUCCUUGCAUACUAUUU - 190
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629