miRBase entry: gra-MIR8717

Stem-loop gra-MIR8717


Accession
MI0027843
Description
Gossypium raimondii gra-MIR8717 precursor miRNA


Sequence

aaacaaaaauuagucuuggaucagaacaacuaauuccauaaucgggcaacgauuugaaauuguaauucaauuauacuacgaagguaacaacgauaucaaagauugcuuuuggcagauacuucgaugacauaaguauuuauggcauguuuguagccauuugucguuaugguacauuuguauccauaucuacuuauaccauugaaguauaugccaaaagcaaucucugauaucgcuauugccuucguuguauaauuaaauugccauuugaaaccauugccugguuauggcAUUGGUUGUUCUGAUUCGAGGCUAauuu
......((((((((((((((((((((((((((((.((((((((((((((.(.(((.((((.((((((.((((((((.((((((((((...((((((((.(((((((((((((((.(((((((((((..(((((((..(((((.(((..((((.((((........))))))))....))))))))..)))))))..))))))))))).))))))))))))))).))))))))...)))))))))).)))))))).)))))).)))).))).).)))))))))))))).))))))))))))))))))))))))))))

Structure
aaacaa                            u              c a   g    u      c        u          caa        a               g           ac       uu     c   --uu    g    uug 
      aaauuagucuuggaucagaacaacuaau ccauaaucgggcaa g uuu aaau guaauu aauuauac acgaagguaa   cgauauca agauugcuuuuggca auacuucgaug  auaagua  uaugg aug    ugua ccau   u
      |||||||||||||||||||||||||||| |||||||||||||| | ||| |||| |||||| |||||||| ||||||||||   |||||||| ||||||||||||||| |||||||||||  |||||||  ||||| |||    |||| ||||    
      uuuaAUCGGAGCUUAGUCUUGUUGGUUA gguauugguccguu c aaa uuua cguuaa uuaauaug ugcuuccguu   gcuauagu ucuaacgaaaaccgu uaugaaguuac  uauucau  auacc uau    acau ggua   c
------                            c              a c   g    c      a        u          auc        c               a           ca       cu     -   guuu    -    uug 


Annotation confidence Not enough data
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Genome context
chr11: 5994050-5994365 [+]

Database links

Mature gra-miR8717

Accession MIMAT0034248
Description Gossypium raimondii gra-miR8717 mature miRNA
Sequence 289 - AUUGGUUGUUCUGAUUCGAGGCUA - 312
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629