miRBase entry: gra-MIR8781b

Stem-loop gra-MIR8781b


Accession
MI0027849
Description
Gossypium raimondii gra-MIR8781b precursor miRNA
Gene family
MIPF0001867; MIR8781


Sequence

uucuaucaguuugguccucaaacuuccuaaccaaagcuuuuagcuuuuaaaauagaggcauuucacaucuauuaauuguuuuauuuauaguugaaauuaucuaauucgguacauaacccuuuuuuauauuuuuaauaaauuagugcuagaaauuaacuaaacaccauuaaaaaauaauugaaaauaaaauuuuaaauauauaauauauaauauauguggaaugugucuguuuuaaaagcugaaagcUUUGAUUAGGAAGUUUGAGGAUCAaacugauaga
.(((((((((((((((((((((((((((((.(((((((((((((((((((((((((.(((((((((((.(((((..(((.((((.(((..((((((((.........(((.....))).....((((.((((((((...(((((...........))))).....))))))))))))..........))))))))))).)))).)))))))).))))))))))).))))))))))))))))))))))))).)))))))))))))))))))))))))))))

Structure
u                             c                         g           c     au   u    u   ag        aucuaauucgguacauaacccuuuu    a        --aaa     gcua 
 ucuaucaguuugguccucaaacuuccuaa caaagcuuuuagcuuuuaaaauaga gcauuucacau uauua  ugu uuau uau  uugaaauu                         uuau uuuuuaau     uuagu    g
 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||  ||| |||| |||  ||||||||                         |||| ||||||||     |||||    a
 agauagucaaACUAGGAGUUUGAAGGAUU GUUUcgaaagucgaaaauuuugucu uguaaggugua auaau  aua aaua aua  aauuuuaa                         aaua aaaaauua     aauca    a
-                             A                         g           u     --   u    u   --        ---------------aauaaaaguu    -        ccaca     auua 


Annotation confidence Not enough data
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Genome context
chr4: 33302477-33302756 [-]

Database links

Mature gra-miR8781b

Accession MIMAT0034254
Description Gossypium raimondii gra-miR8781b mature miRNA
Sequence 247 - UUUGAUUAGGAAGUUUGAGGAUCA - 270
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629