miRBase entry: gra-MIR8778

Stem-loop gra-MIR8778


Accession
MI0027855
Description
Gossypium raimondii gra-MIR8778 precursor miRNA


Sequence

uagcuaauugUUUCCAUAUUAGGGUUUGAACUUUcuuuuggcccaaauuagucauugaauuaggcaauuuuucccauauugagacuugaacgagauaauuguucccauauuggaguuugcacuuuuuuuugucuaaauuaguucuugaacuugguaauuguucccauguuagggccuaaauuuuagaauuuucaaagaaacaugauuaauuaacuuagacaaaaaaaaacuagccccaacaaagaacaauuguuaaguucaaagacuaauuuggauuaaaaaaaacucaaacucuaauguguaaacaauuaucaa
.........(((((.((((..(((.(((....(((...((((........))))..))).....))).....))))))).)))))........((((((((((..((((((((((((((...(((((((.(((((((((((((.(((((((((((((((((((...((((.((((((((...))))((((.(((........)))..)))).....................)))).))))..))))))))))))))))))).))))))))))))).)))))))...))))))))))))))..))))))))))..

Structure
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uagcuaauu     C    UA   ----U   -AACU   uuu    cca 
                                                                                                                                                                                                                                      gUUUC AUAU  GGG     UUG     UUc   uggc   a
                                                                                                                                                                                                                                      ||||| ||||  |||     |||     |||   ||||    
                                                                                                                                                                                                                                      cagag uaua  ccc     aac     aag   acug   a
aacuauuaacaaauguguaaucucaaacucaaaaaaaauuagguuuaaucagaaacuugaauuguuaacaagaaacaaccccgaucaaaaaaaaacagauucaauuaauuaguacaaagaaacuuuuaagauuuuaaauccgggauuguacccuuguuaaugguucaaguucuugauuaaaucuguuuuuuuucacguuugagguuauacccuuguuaauagagcaaguu     u    --   uuuuu   ggauu   -uu    auu 


Annotation confidence Not enough data
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Genome context
chr1: 7355145-7355459 [+]

Database links

Mature gra-miR8778

Accession MIMAT0034260
Description Gossypium raimondii gra-miR8778 mature miRNA
Sequence 11 - UUUCCAUAUUAGGGUUUGAACUUU - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629