miRBase entry: gra-MIR8641

Stem-loop gra-MIR8641


Accession
MI0027857
Description
Gossypium raimondii gra-MIR8641 precursor miRNA


Sequence

uuuuuuuuUUUUUACUUUGGGACACUGAUGGCuaggaccuuaaaaaaauuaaauacacuggugccaaccaacaauguuccaaaauuaaaaaaaaaauacauugggagccgaaaauuauacuuggugcuggccauguaaaaaaauuuuaaauacacuaauaccggccauuagugucccaaaguaaaaaaaaaugucuu
....(((((((((((((((((((((((((((((.((......................((((....)))).((((((....................))))))..............(((.((((....)))).))).......................)))))))))))))))))))))))))))))))......

Structure
--uuuu                             a  accuuaaaaaaauuaaauacacuggugccaaccaacaauguuccaaaauuaaaaaaaaaauacauugggagccgaaaauua   u    g 
      uuuuUUUUUACUUUGGGACACUGAUGGCu gg                                                                                 uac uggu c
      ||||||||||||||||||||||||||||| ||                                                                                 ||| ||||  
      aaaaaaaaaugaaacccugugauuaccgg cc                                                                                 aug accg u
uucugu                             -  ----------------------------------------------------------auaaucacauaaauuuuaaaaaa   u    g 


Annotation confidence Not enough data
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Genome context
chr4: 755210-755406 [-]

Database links

Mature gra-miR8641

Accession MIMAT0034262
Description Gossypium raimondii gra-miR8641 mature miRNA
Sequence 9 - UUUUUACUUUGGGACACUGAUGGC - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629