miRBase entry: gra-MIR8638

Stem-loop gra-MIR8638


Accession
MI0027861
Description
Gossypium raimondii gra-MIR8638 precursor miRNA


Sequence

gugagaauggUGAAUACAGGAAUGGCUCUCUgugccaaucucguuaaagugagggcucuacccuaccucuauuuacgacuacacguuggcccguucagauuuagguguucaguggaaagauaaccuaucaccuaaaguuuucaugaccacuuagauuaggguagagcccucucuuuacgagguuggcgcagauagccauucuuguauucaccauucucuacu
(((((((((((((((((((((((((((.((((((((((((((((.((((.((((((((((((((...........((((.....)))).........((((((((((.(((.((((((...................))))))))).)))))))))))))))))))))))).)))))))))))))))))))).))))))))))))))))))))))))).)).

Structure
-  -                         C                u    u              accucuauuuacgacuacacguuggcccguuca          u   g      gauaaccu 
 gu gagaauggUGAAUACAGGAAUGGCU UCUgugccaaucucgu aaag gagggcucuacccu                                 gauuuaggug uca uggaaa        a
 || ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||                                 |||||||||| ||| ||||||        u
 ca cucuuaccacuuauguucuuaccga agacgcgguuggagca uuuc cucccgagauggga                                 uuagauucac agu acuuuu        c
u  u                         u                -    u              ---------------------------------          c   -      gaaaucca 


Annotation confidence Not enough data
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Genome context
chr13: 56581801-56582022 [-]

Database links

Mature gra-miR8638

Accession MIMAT0034266
Description Gossypium raimondii gra-miR8638 mature miRNA
Sequence 11 - UGAAUACAGGAAUGGCUCUCU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629