miRBase entry: cfa-mir-8802

Stem-loop cfa-mir-8802


Accession
MI0027882
Description
Canis familiaris cfa-mir-8802 precursor miRNA


Sequence

acguccaaccauggagccaccugggcacccacuaagaccaUUUUUGAUGUUUCUCUCUCGGCUuggggccuccuggucgagcagcugcuauuaaggcauguggucaggcugugucccagauuuguaggagaccgugugguc
..(.(((..(((((..((((((((((((...((..(((((((((((((((....(((((((((.((.....)).))))))).))..)).)))))))...))))))))...))).)))))....)).))...)))))))).)

Structure
ac u   ac     -ag  -  ----     -   cca  aa      ---       -  UUCU  -       u  g 
  g cca  caugg   cc ac    cuggg cac   cu  gaccaU   UUUUGAU GU    CU CUCGGCU gg g
  | |||  |||||   || ||    ||||| |||   ||  ||||||   ||||||| ||    || ||||||| || c
  c ggu  gugcc   gg ug    gaccc gug   ga  cuggug   ggaauua cg    ga gagcugg cc c
-- u   --     aga  a  uuua     u   ucg  --      uac       u  --uc  c       u  u 


Annotation confidence Not enough data
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Genome context
chr20: 55613223-55613363 [+]

Database links

Mature cfa-miR-8802

Accession MIMAT0034292
Description Canis familiaris cfa-miR-8802 mature miRNA
Sequence 41 - UUUUUGAUGUUUCUCUCUCGGCU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545