miRBase entry: cfa-mir-8859a

Stem-loop cfa-mir-8859a


Accession
MI0027950
Description
Canis familiaris cfa-mir-8859a precursor miRNA


Sequence

ggcucagucggggucggagccgggauccggaguccgccucgcgguccagcgucguggauccgagucgUGGAUCGGAGCCGGGGUCCGGAguccgccucgcgguccagccucgugguucu
((((......(((((((((.((((.((((((.((((.(((.(((((((.((.(.((....)).).)))))))))))).)))).)))))).)))).))).))))))))))..........

Structure
----------    cagucg      -   c    a      g    c   g       g  u g  g 
          ggcu      gggucg gag cggg uccgga uccg cuc cggucca cg c ug a
          ||||      |||||| ||| |||| |||||| |||| ||| ||||||| || | ||  
          ccga      ccuggc cuc gccu AGGCCU GGGC GAG GCUAGGU gc g gc u
ucuuggugcu    ------      g   c    g      G    C   -       -  u a  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 46690380-46690498 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-mir-8859a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8859a

Accession MIMAT0034354
Description Canis familiaris cfa-miR-8859a mature miRNA
Sequence 68 - UGGAUCGGAGCCGGGGUCCGGA - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545