miRBase entry: cfa-mir-8908e

Stem-loop cfa-mir-8908e


Accession
MI0028028
Description
Canis familiaris cfa-mir-8908e precursor miRNA
Gene family
MIPF0001890; mir-8908


Sequence

ugggcaggccacaccggguucugugcuguguguagugcccUGCAUAGGAAGGUCCUGAUUACCaguaugauguguaacagugccugccuggguagaguaaugcuccacaagaacaucuuuccagugggcccugugucuuaa
.(((((((((.(((.(((...(((.(((((.(((.(((.((((.((((.((((.(((.((((((......)).))))))).)))).)))).)))).))).)))..))).)).)))....))).)))))))...)))))...

Structure
--u     ---    a   c   -uuc   g  -   -u   g   c    A    A    C   A    -  gu 
   gggca   ggcc cac ggg    ugu cu gug  gua ugc cUGC UAGG AGGU CUG UUAC Ca  a
   |||||   |||| ||| |||    ||| || |||  ||| ||| |||| |||| |||| ||| |||| ||   
   ucugu   ccgg gug ccu    aca ga cac  cgu aug gaug gucc uccg gac aaug gu  u
aau     guc    -   a   uucu   a  a   cu   a   a    g    g    u   -    u  ag 


Annotation confidence Not enough data
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Genome context
chrX: 114676803-114676943 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from cfa-mir-8908e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-8908e

Accession MIMAT0034426
Description Canis familiaris cfa-miR-8908e mature miRNA
Sequence 41 - UGCAUAGGAAGGUCCUGAUUACC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545